Michelle Kuttel

CarbBuilder version 2

CarbBuilder: Supported residues

 

CarbBuilder currently supports building of polysaccharides with the residues listed below. Red italicized text indicates recently added monosaccharides.

Anomer/enatiomers/ring forms supported Common name CarbBuilder code
Aldose and ketose monosaccharides
a,b/D/p

abequose (3,6-dideoxy-D-galactose) *

 

Abe

a,b/D,L/f,p

allose

All

a,b/D,L/p

altrose

Alt

a,b/D,L/p

6-deoxy altrose

Alt6d

a,b/D,L/f,p

arabinose

Ara

a,b/L/p

colitose (3,6-dideoxy-L-galactose) *

Col

a,b/D/f

erythose

Ery

a,b/D/p

fructose

Fru

a,b/L/p

fucoseĀ  (6-deoxy-L-galactose) *

Fuc

a,b/D,L/f,p

galactose

Gal

a,b/D,L/f,p

glucose

Glc

a/L/p

gulose

Gul

a,b/D,L/p

idose

Ido

a,b/D,L/f,p

lyxose

Lyx

a,b/D/p

Kdo (3-deoxy-d-manno-oct-2-ulosonic acid) *

Kdo

a,b/D,L/f,p

mannose

Man

a,b/D/p

N-Acetyl Muramic Acid

MurNAc
a/D/p

sialic acid

Neu5Ac

a,b/D/p

paratose (3,6-dideoxy-D-glucose) *

Par

a/L/p pneumosamine (2-acetamido-2,6-dideoxy-l-talose) PneNAc
a,b/D/p

quinovose (6-deoxy-D-glucose) *

Qui

a,b/D,L/p

rhamnose (6-deoxy-mannose)

Rha

a,b/D,L/f,p

ribose

Rib

b/D/p 2-acetamido-2,6-dideoxy-Ī±-D-xylo-hex-4-ulose Sug
a,b/D,L/p talose Tal
a,b/D/p

tyvelose (3,6-dideoxy-D-mannose) *

Tyv

a,b/D,L/f,p

xylose

Xyl

Alditol monosaccharides

D

glucitol

Glcol

D

glycerol

Gro

D

ribitol

Ribol

Other molecules

   
-

cyclohexane-1,3-diol

CycHex13diol

Derivatives

 

-

uronic acid

A

-

acetyl

Ac

-

amine

N

-

N-acetyl

NAc

-

N-amidino

NAm

Z/E

N-formyl

NFo/NFoZ/NFoE

Z/E

N-sulfo

NS

-

O-methyl

OMe

-

phosphate

P

-

phosphoethanolamine

PEtN

-

sulpho

S

-

2,3 pyruvate (R) **

23PyR

-

2,3 pyruvate (S) **

23PyS

-

4,6 pyruvate (axial Me) **

46PyA

-

4,6 pyruvate (eq. Me) **

46PyE

Amino acid derivatives

-

asparagine

Asn

-

serine

Ser

-

threonine

Thr

-

 

 

* when the absolute configuration is part of the trivial name, it may be omitted from the input.

** substituent only supported for DGal, DGlc, DMan.